Hidden Markov Models

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Software

  • HMMER - Profile hidden Markov models for biological sequence analysis
  • SAM - Sequence Alignment and Modeling System, a collection of flexible software tools for creating, refining, and using linear hidden Markov models for biological sequence analysis
  • VEIL - A hidden Markov model for finding genes in vertebrate DNA
  • UGENE - A free multi-platform native graphical interface for HMMER2 package
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