Microarray analysis
From Bioinformatics.Org Wiki
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Software
- MATLAB Bioinformatics Toolbox software provides access to genomic and proteomic data formats, analysis techniques, and specialized visualizations for genomic and proteomic sequence and microarray analysis.
- MAExplorer - The Microarray Explorer (MAExplorer) is a Java-based data-mining facility for microarray databases run as a stand-alone program. It includes graphics, statistics, clustering, reports, data filtering.
- SEPON - SEPON designs gene-specific oligonucleotides for microarray experiments and is able to use EST input from organisms in which the genome is not annotated for genes. SEPON implements a novel algorithm for reducing cross-hybridization by utilizing thermodyna
- Teiresias-based Gene expression analysis - Discover patterns in microarray data using the Teiresias algorithm. Allows discovery of inversely regulated genes.
