Multiple sequence alignment
From Bioinformatics.Org Wiki
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Software
- Chimera - Excellent molecular graphics package with support for a wide range of operations, including flexible molecular graphics, high resolution images for publication, user-driven analysis, multiple sequence alignment analysis, multiple model analysis, docking
- Clustal-W - The famous Clustal-W multiple alignment program
- Clustal-X - Clustal-X provides a window-based user interface to the Clustal-W multiple alignment program
- DCSE - DCSE (Dedicated Comparative Sequence Editor) is a multiple alignment editor
- Friend - Friend, an Integrated Front-end Application for Bioinformatics
- Jalview - Jalview - a java multiple alignment editor
- Mauve - Mauve is a multiple genome alignment and visualization package that considers large-scale rearrangements in addition to nucleotide substitution and indels.
- ModView - ModView is a program to visualize and analyze multiple biomolecule structures and/or sequence alignments.
- Musca - Multiple sequence alignment of aa or nucleotide sequences / uses pattern discovery
- MUSCLE - Multiple sequence alignment. More accurate than T-Coffee, faster than Clustal-W.
- SeaView - SeaView is a graphical multiple sequence alignment editor
- ShadyBox - The first GUI based WYSIWYG multiple sequence alignment drawing program for major Unix platforms
