Phylogenetic trees
From Bioinformatics.Org Wiki
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Software
- ATV - a phylogenetic tree display tool
- fastDNAml - Estimates maximum likelihood phylogenetic trees from nucleotide sequences
- njplot - NJplot is a tree drawing program able to draw any binary tree expressed in the standard phylogenetic tree format
- PAML - Phylogenetic Analysis by Maximum Likelihood
- Paup - Software package for inference of evolutionary trees
- PHYLIP - PHYLIP is a free package of programs for inferring phylogenies.
- PhyloDraw - PhyloDraw is a drawing tool for creating phylogenetic trees. PhyloDraw supports various kinds of multialignment programs (Dialign2, Clustal-W, Phylip format, and pairwise distance matrix) and visualizes various kinds of tree diagrams, e.g. rectangular cl
- phylowin - Phylo_win is a graphical colour interface for molecular phylogenetic inference.
- PyPhy - PyPhy is a set of python scripts and modules for automatic, large-scale reconstructions of phylogenetic relationships of complete microbial genomes.
- unrooted - Unrooted is a tree drawing program able to draw any binary tree expressed in the standard phylogenetic tree format in an unrooted way, that is, using a circular shape, with labels aligned with terminal branches.
