Structure
From Bioinformatics.Org Wiki
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Software
- Abacus - ABaCUS is a no-frills program developed to investigate the significance of the putative correspondence between exons and units of protein structure.
- caRNAc - RNA secondary structure inference for set of homologous sequences
- caRNAsta - Comparative Analysis of RNA structures by Tree Alignment
- Chimera - Excellent molecular graphics package with support for a wide range of operations, i ncluding flexible molecular graphics, high resolution images for publication, user-driven analysis, multiple sequence alignment analysis, multiple model analysis, dockin
- CNS - The 'Crystallography & NMR System' for macromolecular structure anaylsis
- cove - COVE is an implementation of stochastic context free grammar methods for RNA sequence/structure analysis.
- Garlic - a free molecular visualization program
- LIBELLULA - LIBELLULA is a neural network based web server to evaluate fold recognition results
- MODELLER - a program for homology protein structure modelling by satisfaction of spatial restraints.
- ModView - ModView is a program to visualize and analyze multiple biomolecule structures and/or sequence alignments.
- MOPAC7 - a general-purpose semi-empirical molecular orbital package for the study of chemical structures and reactions.
- PyMol - PyMOL is a molecular graphics system with an embedded Python interpreter designed for real-time visualization and rapid generation of high-quality molecular graphics images and animations.
- RNA GENiE - A web based program for the prediction of rna genes in genomic DNA sequences
- RnaViz - a user-friendly, portable, GUI program for producing publication-quality secondary structure drawings of RNA molecules. Drawings
