UGENE
From Bioinformatics.Org Wiki
UGENE is a free cross-platform bioinformatics software package.
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Features
UGENE has modular structure and almost all its functionality comes within plugins. Internally UGENE is designed with support of parallelism to make profit from using multicore computers.
- View and analysis of annotated DNA or protein sequences
- Huge files support, native support of gzipped documents
- Chromatograms visualization
- Search for ORFs
- Integrated support of search requests to NCBI databases
- Multiple sequence alignment with port of MUSCLE
- Easy-to-use search with HMM profiles using adopted HMMER package
- Integrated 3D viewer for files in PDB format
- Designer for custom computational workflows
- Search for Transcription Factor Binding Sites (TFBS) in DNA sequences
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